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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: kal-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.76
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLLLLFIL GSVSPDELIS TRCQAQCLHL MDQRLQNNME LRKTLKHHII QLCKEDATCS  60
   61 ACSAPCREQF DDIKACKKSC VASDDRETCE DSCHYLQRIY QEKPGACPSV SNQSNYECSA 120
  121 LCQMDGECPE TQKCCSSGCS RQCLKPRSSD IKLLPIPRNI SVQERKRKRS IIIRWATGRL 180
  181 SKAQQNENAN LFLVQWRWGL HADESAMTEW QTVTVRNKPY AILKHLLSPG RFYEFRTAAV 240
  241 SQEGSLGFSS PSKPFKISKE AKAPPPPKDL SLGASKVVAS GLWNQMVHWN PPPSDLPIKN 300
  301 YQISWASSTK SEADAFEEQM RKKSTLEFAA HEKRSLQSDD DEEFIGIQER DRQSVVVPSH 360
  361 ATSSEITGLF PNSVYLVEIH ASVDSSDGEL HGEKGVVFIR TADSLSAVPE DREPYTGPKA 420
  421 RIAHGSEELK IEASLKDLKT SSHAPNRPNS PQPAHLEIQT PFFDTELQTQ LNWLNAAHCT 480
  481 PAKRQFSVKV RKTLCREYQP NHHSDTRWHD LRVTDCSALL KGLSFDCDYK VEVTDTLTGD 540
  541 FVVDGVFSTD TCDQTSSLTP IDCSSVTTPI QCQVTSESSA HCHWTRHHDA MQTVIGYRIL 600
  601 LSSPINHDTN TTINQPQLRE VRYENLAPGY VYTVEVQSIT NKGLGRTVST QFVTHPDLDS 660
  661 NAIQRFPGGE IIELPLESSG KLSIFSIFSS FFLVLLLRLL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle