YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-1.2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELVSNLKT RPDISKPQWS QRTYYGRVRH FFTLTNPLTL TSSVARQEQC RQIVLDYKNG  60
   61 KVSPTLTVSE LWKAKTLYDS TYHPDTGEKM FFLGRMSAQM PANMLINGML LSLYRTFPGV 120
  121 VFSHWINQSF NAVVNYTNRS GNSKTSNERL ILSYSCATGG AMAAALSLNA MVKNKNSIAA 180
  181 RLVPFAAVAL ANTINIPMIR SNEVTEGLEL RDENGELLAR SRQMAILSIA QVTLSRIAMA 240
  241 MPDMVMTPII MNRITRTMYY RTRPWMKYSE YPIQTMLAGM ALFFTTPMCC ALFPQKTAVE 300
  301 VTKLEASVQK EIFSRADAPE VVFYNKGL

Type	Start	End	Confidence
Cytoplasmic	1	103	0.92
Transmembrane Helix	104	126	0.70
Non-Cytoplasmic	127	149	0.88
Transmembrane Helix	150	172	0.88
Cytoplasmic	173	177	0.84
Transmembrane Helix	178	199	0.58
Non-Cytoplasmic	200	231	0.53
Transmembrane Helix	232	252	0.67
Cytoplasmic	253	270	0.47
Transmembrane Helix	271	294	0.75
Non-Cytoplasmic	295	328	0.46