YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35864
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.73
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	399	0.88
Transmembrane Helix	400	420	0.85
Cytoplasmic	421	426	0.62
Transmembrane Helix	427	442	0.37
Non-Cytoplasmic	443	522	0.50
Transmembrane Helix	523	543	0.79
Cytoplasmic	544	563	0.58
Transmembrane Helix	564	580	0.51
Non-Cytoplasmic	581	587	0.57
Transmembrane Helix	588	613	0.83
Cytoplasmic	614	623	0.71
Transmembrane Helix	624	646	0.85
Non-Cytoplasmic	647	664	0.71
Transmembrane Helix	665	685	0.89
Cytoplasmic	686	689	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKKGKFWI SRVLVVCACA LLVYSFVALD ITPTPPTEEF GFKDGNQESS SSPRLVFMVI  60
   61 DAFRLSFLTS SKSPMSFTKS EITKKSAKLF DAYARMPTVT LPRITAYLTG TLPSFGTVLT 120
  121 NLATAEMKTA NWISRIQKIG KKVHFFGDDT WIRLLPRSFE KFEGVTSFFV SDYTDVDNNV 180
  181 TRHLDTELSN TNHSWDALIL HYLGLDHIGH SLGGSSSKIP EKLKEMDDVI GRIHKYLKSS 240
  241 TSVDQESYLI VCGDHGMTAA GSHGGASPDE TRVPVVIWKF GREEGNKNYG NQDDSLKQPP 300
  301 RIEQIDVSST IFDVFNMPIP IESYGISLIN YFSDDEEEYF EKQHNQFRRI VQAKHLAISD 360
  361 ICDENCDYSD KFIKSALKKW FLTVQSELIG SASEVPNKSL GVCVFLLLVA LTLSMGLWNL 420
  421 HLSKSDFFIF LINITYFASS LIEEEHEIWY YLGSTVVAIR ALRNFKIWNK TEVKSIFFLA 480
  481 FLHRIACSYT QSTRRRWIMD SSLLPPSIFS DTLDFQPNNL NTILNEYPII VILTCSLFWM 540
  541 YGYKQSKFHI ILPMVSHFLR LFELTQFNEV LMHFIRLSIL PISYSTGSVL AGCLPLLLAI 600
  601 VPVSQILLLL VIYNMGKLFS KLNLGSVEFV TLCMSSFFYT FINIIFNISL RWTFELSADP 660
  661 CWTSAHAIYI LGSHFVPLWM QCFIMHIIA