YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35844
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAETVRKR WKIRRRLSDL KVKLCDATLI LAVGGLILAM LDVEFTATRI LESFVNTSDL  60
   61 SFILRTAAII TTIALLFFLL FYHFIDIKIQ LVETGTSNWR VGITSERVLN TLLEVAICAI 120
  121 CPIPETGVVA WPILSNIAER TRERVNIPIS VLLTLPMFLR FFIVCRYMVL HSSQHQDTAT 180
  181 RTIASLNHIA VDFRFVLKSE MYERPLFVLS IASLMFWCVV SWMLTQCERY AYPSISGFQH 240
  241 FADYLWFEII TFFSIGYGDV QVNTYCGRGL AMLTAIVGTL FSSTLIALIS RKLILTTCEK 300
  301 RVNHIIAENN ITNEHKNAAA CVLQNTWRTV LRARDYQKSS SRRNQQRLAK MQRMLLCSVI 360
  361 TFRKTRWKLR MQMEDEDDFF TARRAFNETE DRLQKVRQRQ SQLDGKISML FENVEALTQA 420
  421 VMSRKCYLRQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.99
Transmembrane Helix	20	41	0.94
Non-Cytoplasmic	42	61	0.93
Transmembrane Helix	62	84	0.92
Cytoplasmic	85	144	0.82
Transmembrane Helix	145	170	0.74
Non-Cytoplasmic	171	204	0.59
Transmembrane Helix	205	225	0.93
Cytoplasmic	226	239	0.51
Transmembrane Helix	240	260	0.72
Non-Cytoplasmic	261	268	0.58
Transmembrane Helix	269	290	0.89
Cytoplasmic	291	430	0.72