YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.44
Transmembrane Helix	17	40	0.82
Cytoplasmic	41	186	0.53
Transmembrane Helix	187	208	0.91
Non-Cytoplasmic	209	216	0.71
Transmembrane Helix	217	237	0.87
Cytoplasmic	238	248	0.78
Transmembrane Helix	249	270	0.91
Non-Cytoplasmic	271	278	0.86
Transmembrane Helix	279	299	0.94
Cytoplasmic	300	319	0.94
Transmembrane Helix	320	339	0.96
Non-Cytoplasmic	340	359	0.87
Transmembrane Helix	360	379	0.92
Cytoplasmic	380	385	0.83
Transmembrane Helix	386	407	0.89
Non-Cytoplasmic	408	412	0.66
Transmembrane Helix	413	437	0.83
Cytoplasmic	438	445	0.74
Transmembrane Helix	446	467	0.90
Non-Cytoplasmic	468	474	0.80
Transmembrane Helix	475	498	0.85
Cytoplasmic	499	553	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYILDWIST YRNNRKILLL IVYIALFLDN MLLTTVVPII PEYLLRMEHP NETDILFSHN  60
   61 SQKRVKRQWE DDDSWDVPLK LGNNADIDWD ENPIGPVGRS ERRKESDRKN HNSKNREYND 120
  121 RRKYMSPAAK KPPVETEEPA VRTISEEERH KLLASENVHV GLMFGSKALV QLLVNPWIGP 180
  181 LTNRIGYTMP MFGGFVIMFC STILFAFGDS YFTLWLARAL QGVGSACTST SGMGMLAQAY 240
  241 PDDLERGSAM GIALGGLALG VLVGPPYGGL LYQWSGKELP FVLLALLALF DGSIQFMVLQ 300
  301 PKIDRGEPEG SSIKQLAKDP YIIVAAGAIT IGNLGIAMLE PSLPLWMMES WGANSLERGA 360
  361 AFLPASISYL IGTNIFGPLA HRIGRWLSSF IGLVVIGFSL LSIPSATSVA GLIIPHALLG 420
  421 FSIGMIDASM FPLMGYLVDI RHVGVYGSIY AIADAAFCFA FALGPFFSGP LVKSLGFPTM 480
  481 MYIIAVISFL YAPLMFLLKN PPVLIEPTPQ TQSVELRQNG DSRVTNENYE RIEGMNIAGQ 540
  541 LQQNNMYSAT SAF