YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35778
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSQDPVYSQ NDPLLVDSSN RSKKRDHWKS IAKIATVFIG ILFITSEVVG KNNENKHVPL  60
   61 LHRTHFKTQI KIIQLRPKPG QNSVKFTYDI IKNTYSHDND DGSQFRPFVA SNIERVVDKE 120
  121 NNETYLYPEY PLEFAHIHWV FNVEIPGKSV ENIMVQVPGM ENITRDEGEV YAKTCFNQLD 180
  181 FLPNKTGNII PMNKTLALDH NIDYVTMNII IHKPIKFLKT NAKESSGVTF SIEVYWKTVN 240
  241 FPTPVSSNTT TSEKFSTSSR SNDTELLRRS EELKEQSEYI QLQPESGQNH VKFTYDIINN 300
  301 IYSHDNQDGS PVNPKQVFNI KRVVDEENNE AYIGQEAPYR RSNIYWMFDL RNKGRNVEKV 360
  361 VVKMTGMDDI TQHRAGTVEC CLNYLINCTG IPINESLTIE QNVGKLYIEV SEKKYCSHKS 420
  421 VLDCTSQPH

Type	Start	End	Confidence
Cytoplasmic	1	29	0.54
Transmembrane Helix	30	50	0.50
Non-Cytoplasmic	51	429	0.99