YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-28
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTHNAVDTF DMGSADSSLS SLNEIPMEMD LTSAGPPISD DETEVETKEK KLFVYAKRIL  60
   61 PHVGLVILLF LYLIAGAFLF RYLEAPKELE TRNHELTTIL GLRDEFQDHI WNITQDSDNR 120
  121 ISREAFNAIN QEYFEQLVKN MFQAYRNQFI TAKHLLNKTR EDEVLWTFPN SMFFAATVIT 180
  181 TIGYGNLVPI TVTGRVACII FALLGIPLLL VTIADIGKFL SEFLSYLYRS YRGFKRKLRR 240
  241 QSKKITSQYR SQSQSRSSSV MGSSKAGSMN LHDIDSDSED SAGDELRIPV FMVLLVLLAY 300
  301 TAIGGFLFQS WEHLEYFEAF YFCFITMATV GFGDIVPNEQ VYVFFTMAYI IFGLSLATMC 360
  361 IDLAGTEYIR KIHYLGTKME DAKGAVMTGL QAGEHLLKHT GIEVIKTAGG KLVQVRGAVL 420
  421 SSKEARELGM SYLLQFNYQH KNVLYEPLTG NLAKVVKEAN IKILPDDITE KDGYIVQNKS 480
  481 YDRPVLGERG FVRLNGNAIK RIMIPLRNQA ICVPYLIQKE SDV

Type	Start	End	Confidence
Cytoplasmic	1	58	0.84
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	165	0.83
Transmembrane Helix	166	188	0.80
Cytoplasmic	189	195	0.60
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	287	0.82
Transmembrane Helix	288	308	0.94
Cytoplasmic	309	316	0.69
Transmembrane Helix	317	336	0.85
Non-Cytoplasmic	337	342	0.76
Transmembrane Helix	343	365	0.89
Cytoplasmic	366	523	0.92