YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35686
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWVPDEWSI DHDTLIDAGG YVQKLKLYPY FDAAHYVLTC LSVRHDLGPD AISFSRKHPF  60
   61 SCWLSCMLMS FAGSFLSCFL LGEPIISPLK QHADILLGSI VWYLVFYSPF DVVFRLATWF 120
  121 PVKLGLSVLK EVQRTHKIAA GVKHAVRIYP ESYLVQILVG VAKGAGSGVV KIVEQLARGT 180
  181 WHPTNHEILR PSFTTKACVI ASIVFTLERH SMYVTAPHDL VYLCVVGFFI YFKLASLCLS 240
  241 VHDVLMPIEN VLCAVFMGGI IDAFAKAVDA TKKAIHSNRV LSEEEILSKE REKVLKKKKL 300
  301 LAQMSNGTDK KNN

Type	Start	End	Confidence
Cytoplasmic	1	61	0.95
Transmembrane Helix	62	82	0.94
Non-Cytoplasmic	83	94	0.75
Transmembrane Helix	95	117	0.77
Cytoplasmic	118	218	0.83
Transmembrane Helix	219	237	0.79
Non-Cytoplasmic	238	245	0.57
Transmembrane Helix	246	265	0.66
Cytoplasmic	266	313	0.84