YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sre-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKILDPSK NATYLWLPVY FYDEPFQFQI LSSIIELVFY ISCFHLMTIS LYVMLKVQIF  60
   61 HRNLYILYIP MFCVWYGLIA GKLITIAYRL KFVDLDYELG EHIAMWTDDQ AKMLHVSSLR 120
  121 GLELLIFGGF VQWHYMYTVV YGILGVAAER AIASVLIENY ETNTQLYIPI ALTIITQFLA 180
  181 ISTSLSVLFH KASVFLSHLP WIISCSLGAL AYLFIKIVNE NFQKQITNPR RKRLFTISQQ 240
  241 FQVKENLRAL RLGTRLVFVV FFYVAFVSFG MFALAFDLVS SAYCHFVENF LFLNPYPICF 300
  301 TAMLTIPHWR KHFQNACFTW RLVKSAWTKP KTSTTSVEIS TTKKLEAETD LYFRQLNESW 360
  361 I

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.85
Transmembrane Helix	30	53	0.81
Cytoplasmic	54	63	0.80
Transmembrane Helix	64	86	0.89
Non-Cytoplasmic	87	132	0.89
Transmembrane Helix	133	153	0.84
Cytoplasmic	154	165	0.82
Transmembrane Helix	166	189	0.88
Non-Cytoplasmic	190	196	0.77
Transmembrane Helix	197	215	0.95
Cytoplasmic	216	255	0.92
Transmembrane Helix	256	276	0.94
Non-Cytoplasmic	277	289	0.74
Transmembrane Helix	290	309	0.82
Cytoplasmic	310	361	0.92