YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35629
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPILLVFLF SALSQCSRLA EEEEQMLIRH FTKEGEVSTM DQLRDTIGPF RDPLNFSHMN  60
   61 YSTLTDHIHN LHRKFPNLTH IYSAGQSVQG RELWVLVVSR YPIEHRKLIP EFKYVANMHG 120
  121 NEVTGRVFLV SLAHTLLENY NSNLWIRQLV DSTRIHLMPS MNPDGYEHAS EGDQAGVTGR 180
  181 QNANGKDLNR NFPSRFPNYF PTSEIQPETI AIMNWTRQIP FALSANLHGG TTLVNYPFDD 240
  241 FPTRTRQSHY APSPDNALFV RLAYTYARGH ERMWKKGPRC LDDDLNISVD PQNGIINGAD 300
  301 WYIVSGGMQD WNYLNTNCFE VTVEMNCEKF PQTKKLRYLW EENKYALLKF IDLIHGAIHG 360
  361 LVIDADTGEG IVNATVSIDE RAKIVVSYGE GEFWRLANMG KYDLTFDHSD YYPVTQTVHV 420
  421 TPQDRSPYIE VRLQRIIPRS RPVLIPTKSV PNKDEYNVDN SNNKDLRIVT MSSSVCHFSV 480
  481 FMIILSLASL FL

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	469	0.99
Transmembrane Helix	470	491	0.54
Cytoplasmic	492	492	0.59