YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	irk-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAEELERL SGENGAKKEL NGWRLSSSAP ELGVQRARLV SKDGKTLLNN IQIPERFRQA  60
   61 YKWRYCRNWF HLIIECNWRT ICILFLLGFI VSWTIFAVIY YVISRLKTVK KDESCIANVD 120
  121 TLISAFLFSM ESQHTIGYGL RYMTDLCPPA YLTLCVQCVV GVFLQTILAG IVIAKILRPK 180
  181 KRRQEMRFSR MAVIGPLDEH DKRPTLMIRL ADIQEKLFLA ESHVRLYMAC SKINSRGDRE 240
  241 LIGVKDMNVG YDSGWDRVLL LWPIIVRHVI NEDSPLYGMS RENIVKADFE LIMTVEGIVE 300
  301 ATGMTFQART SFLPDEILWG YKFKPMVLMN EKLSKYEVHY SFFDQTERVC DFDAQTIETE 360
  361 ETEDEHHHNA SGFL

Type	Start	End	Confidence
Cytoplasmic	1	76	0.75
Transmembrane Helix	77	100	0.85
Non-Cytoplasmic	101	149	0.79
Transmembrane Helix	150	177	0.83
Cytoplasmic	178	374	0.96