YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIISSVNRT CASESLLELY RSYKYILSTS FNIIIPIISL FFLVYAIKQL CAQSIIQYST  60
   61 RVLLITTILF AVCHQIAYFC FKADLLYTML FKLDQPCNLQ HSSYDCRFIT IATTTSNCGM 120
  121 ALVQLAMSID RVFALKFNRV YYKLKSIPGI TLALITLSIS FSMFFILTID DPLSGYVNHC 180
  181 GFYPTYSQDK FHIFLDVTLY LAVFNFVFDI GLMYYSYQEI LWKRSYSFVN RFQSRISLKC 240
  241 TQAIFIISIC QCISNVLYSG LLSLLMKLGR YMSSADYNLS LSLAYTTPYS CLILPILICK 300
  301 VLEYIKKQRT VGILSLRNQK QSMEGHMAMI NSAWK

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.79
Transmembrane Helix	25	47	0.88
Cytoplasmic	48	59	0.68
Transmembrane Helix	60	81	0.88
Non-Cytoplasmic	82	107	0.79
Transmembrane Helix	108	128	0.76
Cytoplasmic	129	146	0.88
Transmembrane Helix	147	169	0.91
Non-Cytoplasmic	170	196	0.90
Transmembrane Helix	197	217	0.92
Cytoplasmic	218	237	0.95
Transmembrane Helix	238	262	0.85
Non-Cytoplasmic	263	280	0.88
Transmembrane Helix	281	302	0.86
Cytoplasmic	303	335	0.95