YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35533
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQIKFFWL FKNSQTFLFT LRNSEKVSIL NNNFGSRSTF YSLQFLYYVF SHRMSASQKQ  60
   61 KVVKVPTVNL PPQSSSRAPS TLNILKMTNK KEFAEYAIMI IVNLANVALV LIKSVAAYLS 120
  121 SSFSIGTSAI ESFGDVFVSF LLLVQLILDK RVKRSEYPRG RSSESTTNLT ASVVMMTLAF 180
  181 VNFIQSFDAL ITGNLNPEFG TPHIIVVIVN IVVKLFLFFV CLIKRENNQI RVLMRDQLTD 240
  241 VLTNSIALVA VCIAHSYWKE CDFIGAFIIF LLIIRNWAPI VSESWFKLQG IKGDDEINDK 300
  301 ISQIISSNQS MFTVIVGYIT YHVGNKAIVE IYCEVENQQN REEIQSKFSA DEVLAVYLLP 360
  361 VEESKNVHLL SVKQPDVDCS KNAESVELLQ KV

Type	Start	End	Confidence
Cytoplasmic	1	95	0.97
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	126	0.76
Transmembrane Helix	127	148	0.91
Cytoplasmic	149	165	0.96
Transmembrane Helix	166	187	0.89
Non-Cytoplasmic	188	200	0.84
Transmembrane Helix	201	223	0.90
Cytoplasmic	224	237	0.94
Transmembrane Helix	238	258	0.83
Non-Cytoplasmic	259	262	0.82
Transmembrane Helix	263	281	0.85
Cytoplasmic	282	392	0.88