YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35475
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKSPSCLI FLLLFLFSST VNSQKLAVVV IDGLAANTFY KFSHLSVFRT FEEEGVWSTK  60
   61 VFPVFPTFSI SNRHSLLTGT LPRRHGIIGD YINNWKDNLK FQNFTADSDF SRDWWSIDPI 120
  121 YISALRSSAS VAMFFFPECD VDWDVAPQIC VPPRTDGKTF ADESQAKRVI QATREHDLTL 180
  181 IYHPWIGEEI RRKGVHHTNE KHSKEVLRFA QSLERLTAQA RERVDLNVIV VSTHGFIDVP 240
  241 RKNIRVMDEY VPMELIETTV GSGAIKQLQV KKGKTHQVYS QLHDHNPIPN VHVYYTTPKS 300
  301 GNLPDHYHFK KSDIVADLVL LADPGYAVVT KDEKKQFPKP KLQEITAAID GYNNELPDVL 360
  361 GVFLGYGPAF RVGFRKGPIQ LFDVYSLMCS LLSIEESCNH TPGRILRIDD VLTSDARVSI 420
  421 RNPISLISTV FSVILVILFS VVRSVY

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	423	0.99
Transmembrane Helix	424	442	0.87
Cytoplasmic	443	446	0.62