YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35353
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.75
Transmembrane Helix	6	29	0.86
Non-Cytoplasmic	30	44	0.75
Transmembrane Helix	45	68	0.88
Cytoplasmic	69	74	0.73
Transmembrane Helix	75	94	0.92
Non-Cytoplasmic	95	101	0.59
Transmembrane Helix	102	122	0.87
Cytoplasmic	123	136	0.73
Transmembrane Helix	137	158	0.82
Non-Cytoplasmic	159	164	0.50
Transmembrane Helix	165	181	0.67
Cytoplasmic	182	195	0.50
Transmembrane Helix	196	217	0.86
Non-Cytoplasmic	218	225	0.56
Transmembrane Helix	226	247	0.93
Cytoplasmic	248	254	0.63
Transmembrane Helix	255	280	0.77
Non-Cytoplasmic	281	284	0.46
Transmembrane Helix	285	305	0.59
Cytoplasmic	306	320	0.88
Transmembrane Helix	321	343	0.86
Non-Cytoplasmic	344	356	0.80
Transmembrane Helix	357	377	0.93
Cytoplasmic	378	396	0.81
Transmembrane Helix	397	418	0.92
Non-Cytoplasmic	419	433	0.75
Transmembrane Helix	434	452	0.95
Cytoplasmic	453	505	0.89
Transmembrane Helix	506	526	0.84
Non-Cytoplasmic	527	527	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISIFLIGF VFFMGGISVW LMPTFKLGIF FLEWDFLSLK FNFYFNSILF SFILFLVTFS  60
   61 VLVFSTYYLN SELNFNYYYF VLLIFVGSMF SLNFSNSIFT MLLSWDLLGI SSFFLVLFYN 120
  121 NWDSCSGAMN TALTNRLGDY FMFVFFGLSV FSGYYFLSFS MFSSYMSLLL LLTAFTKSAQ 180
  181 FPFSSWLPKA MSAPTPVSSL VHSSTLVTAG LILLMNFNNL VMQKDFISFV LIIGLFTMFF 240
  241 SSLASLVEED LKKVVALSTL SQMGFSMVTL GLGLSFISFI HLVSHALFKS CLFMQVGYII 300
  301 HCSFGQQDGR NYSNNGNLPN FIQLQMLVTL FCLCGLIFSS GAVSKDFILE LFFSNNYMMF 360
  361 FSLMFFVSVF LTFGYSFRLW KSFFLSFNKV MNHYSSTVFM NFLSLVLVIF SISFLWWMNF 420
  421 NLLNIPSLFL YVDFFGPLVF LFMMIFLSFL ILKMLFKELM YKFLVDYLAK NSIYKMKNLK 480
  481 FMDLFLNNIN SKGYTLFLSS GMFKNYYLKS LNFNSVVVLI FIFFMIC