YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35346
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQVYFLDIF MFVFVLQFLF YFKESMLNTL VKKFLNSLVG VFSYTNTLPL SSVISIFTFI  60
   61 VLLTCCFGGY FTYSFCPCGM VEFTFVYAAV AWLSTLLTFI SSEKFSVYMS KPGDTYLKTL 120
  121 SMLLIEIVSE FSRPLALTVR LTVNITVGHL VSMMLYQGLE LSMGDQYIWL SILAIMMECF 180
  181 VFFIQSYIFS RLIFLYLNE

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.71
Transmembrane Helix	5	22	0.86
Cytoplasmic	23	47	0.63
Transmembrane Helix	48	73	0.81
Non-Cytoplasmic	74	82	0.56
Transmembrane Helix	83	101	0.91
Cytoplasmic	102	136	0.75
Transmembrane Helix	137	159	0.77
Non-Cytoplasmic	160	166	0.75
Transmembrane Helix	167	189	0.91
Cytoplasmic	190	199	0.74