YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-13
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFKLALYCL LISFVSSKNI LIYDPIFGFS HVKFVSLMAE IIANHGHNVT LFRPYHIALP  60
   61 NVDGLVKNKN IQIIDYFPKH YDELLHAEKQ TFPGFWNDPL ISQPVLRSLV VSKLISGEMK 120
  121 RTATQLLQDE RVLNELRSKK FDVVISETFE ITGLYLAHII DVPCIPMMPA VRYLDLGYLL 180
  181 GQPSLIGYAQ QPGSKMAPEA GFLDRLNDVY QYFFMSCETD WTSQYQNDNI EAAIGRPLPN 240
  241 WKDLLRNSPI YILNSNPYLD FAVPTTATIV QVGGMTVDLK KMKNVAKLSE EYETILAERD 300
  301 YAVLISFGSV IRSFQMPDNF KVGLIKLFES LSDVTFIWKY EKGDVEFQKR LPKNVHLKKW 360
  361 VPQPSLLADK RVKLFVTHGG LGSTTEVAYT GKPALMVPIF GDQPNNADML ARHGGAIAYS 420
  421 KFDLANGEKL ANTVKDMVFN PKYKEKAELL FDVLSNQPID PKENFIKHLE FAMKFPNHRS 480
  481 QVPAVNQAGL IAQYYLDVIV FFVMISLISS YLSFVALCRL ARVISGKKLK TD

Type	Start	End	Confidence
Signal Peptide	1	17	0.97
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	497	0.99
Transmembrane Helix	498	518	0.89
Cytoplasmic	519	532	0.87