YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35307
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEVPLIES PVAGPVPNGS VVRPPDIVFV NVGGRRARLN SDIIIRRLAT SRLAVFCEKS  60
   61 HVERLTDCDA FFESTSEYYF ERSPIIFEYV IDFYVTGKLH RPMDICPIRL RYELDYWRIP 120
  121 TPFMSPCCIL EENNNIAGKM STEKAFVDSS LPSSCFDKVV LGPQRLKLYR LMENPRSSSG 180
  181 AKIFSVGSAL FVLLSLLGLI LSSMPELQDE NKEPHYLLHW LELLCMVYFT FEYLARLLVN 240
  241 PKKAEFIRSP LNVIDLLTVL PFMIEAFNEL QWMKEFRGAM LVVRVMRLAR VARIFKLARY 300
  301 STGLRAFGET MKKSAAELSM LGMFLVTGIM LFSTAIYFFE RDEPNSKFYS IPAACWWCVI 360
  361 TMTTVGYGDL VPITAGGKVV AALASVCGII VLAFPISMII DKFAESTGGW SGGDGDEEQG 420
  421 HMIVHRTVHP LNNGAPAAQP VKKKSKRYVG F

Type	Start	End	Confidence
Cytoplasmic	1	179	0.97
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	215	0.87
Transmembrane Helix	216	239	0.84
Cytoplasmic	240	250	0.81
Transmembrane Helix	251	267	0.58
Non-Cytoplasmic	268	317	0.51
Transmembrane Helix	318	339	0.92
Cytoplasmic	340	347	0.51
Transmembrane Helix	348	371	0.80
Non-Cytoplasmic	372	378	0.43
Transmembrane Helix	379	400	0.91
Cytoplasmic	401	451	0.60