YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35221
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQNAPFLY SQIDPLLLSR TNRPQPRDRW KTIIKITTTF IGVLMVTTPI VFGLSGVAGN  60
   61 TSHFKNISST TGKYPEKNST DFDTSTTTVS EANTTFDTTE SLYLAEEITT QEKLIQLNPN 120
  121 SGHNYVKFTY DILNNTYSHD NIDGSPVAPY FVDKIERVVD RKNNEAYLHQ EFPDDFSNMY 180
  181 WAFSLKNDGK SVEKVVISIP GIEEIVNNRA GVVETCPNFL INCFNIPVEK SLTIEQQMDK 240
  241 LYISIMLQKD IKVLKTKLKG VSNVESFKIE VYWKNMTMDS PTTTTPGSIA TTKSSTTTIT 300
  301 ETHHQPDISS TRLTEHQDII QLTPKSGQDY AKFTYDVISN TYSQSNEDGS PVKPYLASNV 360
  361 EHVVDRRLNV AYIHMKEPIN KRIGLINWEF DFRFPGRSVE KLEIKLTGMD EIVHNGGTAN 420
  421 ACLHDSFKCT AIPINGSLTI EKPQFNKFFM QIELFKDIKV FKTELNDRSS AESISIVVYW 480
  481 S

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	59	0.87
Non-Cytoplasmic	60	481	0.99