YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35204
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEPAETSQ KLIKSGEYLI VQKIDGEQSR IVRFTPKQKI LIEKLKFVAD SAFGKPHGLF  60
   61 EVSNNQCLPM SVDRLIEELQ LQEASVATSS IDPEVTEPSE PSLDPRVVIA PSALKLEPEQ 120
  121 KRQKLEMDAV LEMKKQGVSG QEMVAKLVEG SASFQTRTVF SQSKYIKRKA KKHSDRVLIL 180
  181 RPTIRLLAKA YYLKDPDRLA MLRADQLALI LQMAGLHHGK NVVVFEQTLG LITSAVIERL 240
  241 GGTGACIHIH RGAVAQSIPC VHSMNYDDNT LSTFLPVRIK CVLAGKHLPY DNNRKAVNGD 300
  301 DDNLEEVNGD KEPEKIEDQD LEALARRNDR LDREKRGIDL INDEQIHSLI IGSRTVDPIS 360
  361 VLELLYPKLA PSGTIVIYSP HQNILISAYD WLSKRQTINL VLTDQMCRVM QVLPDRTHPL 420
  421 MAQHVAGGHI LTGIKITVFA FYLLFFIVEF SE

Type	Start	End	Confidence
Non-Cytoplasmic	1	425	0.76
Transmembrane Helix	426	448	0.72
Cytoplasmic	449	452	0.51