YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	54	0.69
Transmembrane Helix	55	74	0.95
Cytoplasmic	75	96	0.71
Transmembrane Helix	97	122	0.75
Non-Cytoplasmic	123	142	0.86
Transmembrane Helix	143	164	0.93
Cytoplasmic	165	174	0.86
Transmembrane Helix	175	196	0.94
Non-Cytoplasmic	197	216	0.92
Transmembrane Helix	217	236	0.93
Cytoplasmic	237	249	0.82
Transmembrane Helix	250	271	0.90
Non-Cytoplasmic	272	298	0.82
Transmembrane Helix	299	319	0.85
Cytoplasmic	320	349	0.88
Transmembrane Helix	350	366	0.86
Non-Cytoplasmic	367	371	0.59
Transmembrane Helix	372	393	0.80
Cytoplasmic	394	402	0.87
Transmembrane Helix	403	423	0.92
Non-Cytoplasmic	424	430	0.68
Transmembrane Helix	431	450	0.94
Cytoplasmic	451	526	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIEGVPTI GDIAASRHQM GLWSCMSYVI ANIIGAGIFI TPGPILQYTF SNGLALLVWI  60
   61 GCGLISLIGG ICYIELGTSI HDPGCDFAYT VYVGWEGIAF SFMWVGVIMS FPASAAVQAL 120
  121 TFGQYIVAGM APIWPLEHPW DGIIEKGLGF ALIIVLTILN LYAIDKYASK FQIVVTIAKM 180
  181 LSLAIIIVTG FYYLIFKGQT EYLEHPFEGS NTNPGQISLA FYGALWSFAG WDILNFGTPE 240
  241 IRNPRRTMPI ALLGGVSIVT AVYLAMNISY MTVLTPGQIM NSTAVAADFA QITLGGFSYA 300
  301 IPFMIALLLI GTLNSNIFCG SRFTHAAARE GHLPTFLSCI NEESNSPRAA LLFQLVCTVV 360
  361 VTFIDTNSLI NYVSFVMFGQ RVFTMTALMW IRYRNIPVHP DAIRVPLIFS FLFWLITIAL 420
  421 VVVPFIEEFT QTIVGVGLVL MGVFLYIIFM KPMKLPEFLI RFNDSMTRIT CKILFTTPDL 480
  481 KHHSETRTLK SENSGETVVT RFNYEAVASQ DDRTKLPTTH VDETGF