YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34810
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.80
Transmembrane Helix	11	29	0.89
Non-Cytoplasmic	30	60	0.94
Transmembrane Helix	61	83	0.90
Cytoplasmic	84	91	0.89
Transmembrane Helix	92	114	0.92
Non-Cytoplasmic	115	120	0.79
Transmembrane Helix	121	142	0.87
Cytoplasmic	143	151	0.81
Transmembrane Helix	152	173	0.84
Non-Cytoplasmic	174	180	0.81
Transmembrane Helix	181	203	0.94
Cytoplasmic	204	268	0.99
Transmembrane Helix	269	291	0.91
Non-Cytoplasmic	292	308	0.87
Transmembrane Helix	309	329	0.93
Cytoplasmic	330	336	0.91
Transmembrane Helix	337	358	0.92
Non-Cytoplasmic	359	368	0.77
Transmembrane Helix	369	391	0.90
Cytoplasmic	392	406	0.83
Transmembrane Helix	407	427	0.90
Non-Cytoplasmic	428	432	0.70
Transmembrane Helix	433	454	0.90
Cytoplasmic	455	472	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRLWPVKQ VCIFALIAFA SNFNYGFSTT YINTSVDEFK TFLNTSLSRR HVIMTEEKYD  60
   61 LIWNVFLNCW FIGSFFGVWI NSIFSERFGR RVGFLIGNSV AFISSILQCL SLIWYCPELL 120
  121 IVSRFITSIC MAATYQSCIL FLQECSPTHL RGSFSFLSEV SYSSMTMVGS FLGQDYIIGS 180
  181 HLFWLCFFVV PFCLFFTLIL FILPETPKFL LISKDEEEEA IKSVKYYHGD GTDAKQVLED 240
  241 IRKEAECEQD SSKSTTFQKM KELFTERHLR MALILSVSAL TNTVGLWALL LSSTFFLENA 300
  301 NVESEIAEWS TTAMGLAYVS GTITGGIVIE KVGRRKLLLL FTFLNNLALI AFVFFAKIRI 360
  361 LIDPMKYGCL VALIIYGYTY GTGVGPISWF ISSELVPQKH RSIAQSVAYS MNTVMVVIST 420
  421 FTVLPLYSVI GSYAFLILYS IPSFISMLIL FRYLPETKGR EIHDIVNELK KK