YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34714
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLHMPTLN LVLTVVGAGF ILSIQSLYYI KVFFDEFHLP PSYLKVVQIL FLVWNAVNDP  60
   61 MMGYMQDLGF CGMKWIMDRR KVVLYAGPVF AASFLLFWFP WSTSIGWVTA LHLLVSLFIY 120
  121 DTLLTLVLSA YCGLCVENSR SHEDRVRVIV YGEIFTIVAG LLIYPLETMP HTNEHYWLFQ 180
  181 LCCVVIACIS AALMAFSGYH LKVERPINED HQLEKFQEGE VVKETKQDGW KNALTVSLQI 240
  241 AKEPRFICLV GAQFFRILRF IANENFLIVF TEGLLVNNGF FEKNSGSLGL FYVLARSSGS 300
  301 VSRFFLICEH DQFQILFLLL WVPTNRFGTQ AVIQSLNILS IFNVIFILYA GVNNITAIAI 360
  361 FIILENAISR CGWQGFYIVV AGEVVDTDMK TNNRKTPFST IIFTLKALFN KPADQLAPVF 420
  421 VLSLFLERGG YPQLTVPCQQ FYEDNYSNST MFNSTSMEST TLSGYPTVAE CTNYSQWMFL 480
  481 ALAIFPAICA IGESMFVAFD QYWRRHIKGK TGHLGDD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	43	0.69
Transmembrane Helix	44	62	0.70
Cytoplasmic	63	81	0.84
Transmembrane Helix	82	101	0.96
Non-Cytoplasmic	102	109	0.80
Transmembrane Helix	110	135	0.84
Cytoplasmic	136	147	0.87
Transmembrane Helix	148	166	0.96
Non-Cytoplasmic	167	175	0.85
Transmembrane Helix	176	197	0.95
Cytoplasmic	198	338	0.74
Transmembrane Helix	339	364	0.79
Non-Cytoplasmic	365	476	0.64
Transmembrane Helix	477	499	0.85
Cytoplasmic	500	517	0.71