YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snt-6
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVHEITVPV EFLYVVGAAM LSAFVVVGAA VYKMRKPVDI DELDCEQTAR LFRPEVLAPT  60
   61 LTVDMESRKV QPSLKARLSQ SINPWKTSII DQLRPEVVSE FRGRINFSVA FEKECSTLHV 120
  121 HLMEAVDLPV KDFTGSSDPY VRAFLLQDPG QSERSKVHRR NLNPTFNETL SFRGHSMKKL 180
  181 HDMTLVLQVM DYDRFSSDDP IGEILLPLKH VKFESSPVYW KHLQRPTVSK DACGEIMISL 240
  241 CYLPTSGKIT VSIIKARDLH AKDRTRHYDT YVKMWMVQQG NKLEKRKTSV KPHTPSPIFN 300
  301 ESFAFSIPVK QVLLAEVNLV LTAMEYDVIG SNEEIGHVIV GGLGSEHGQR HWSECVNHPE 360
  361 QPVAMWHKLC PKW

Type	Start	End	Confidence
Cytoplasmic	1	11	0.39
Transmembrane Helix	12	32	0.77
Non-Cytoplasmic	33	373	0.63