YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34631
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.98
Transmembrane Helix	43	68	0.83
Non-Cytoplasmic	69	95	0.86
Transmembrane Helix	96	114	0.88
Cytoplasmic	115	122	0.74
Transmembrane Helix	123	144	0.90
Non-Cytoplasmic	145	151	0.65
Transmembrane Helix	152	170	0.94
Cytoplasmic	171	179	0.87
Transmembrane Helix	180	202	0.92
Non-Cytoplasmic	203	207	0.80
Transmembrane Helix	208	228	0.90
Cytoplasmic	229	286	0.96
Transmembrane Helix	287	309	0.91
Non-Cytoplasmic	310	318	0.78
Transmembrane Helix	319	340	0.87
Cytoplasmic	341	347	0.84
Transmembrane Helix	348	367	0.91
Non-Cytoplasmic	368	375	0.58
Transmembrane Helix	376	395	0.78
Cytoplasmic	396	411	0.61
Transmembrane Helix	412	426	0.40
Non-Cytoplasmic	427	428	0.42
Transmembrane Helix	429	453	0.83
Cytoplasmic	454	484	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVRWAPSDG SLGDYTYQQD MSSSDKLSAD DVLNTLDKSN RHILTCILVC GLAWSPLAFT  60
   61 GLCPSFVVKA SENSSFIGVA DEFDLTGDAS WLAESTTTFY MVGNMIGGMF IPPLADHYGR 120
  121 LPVFVATVLL MAVGGMISAF STSIMMFCIM RMIHGIFYTA AGLAGWVLGY ENTPLRLRFF 180
  181 TSVYFGVMWV VGACFLGLLA YILPDWRYLM FCISVPNIFV ALLIYMTVPE SLHFLVSSQQ 240
  241 NEKIEAWLEK IRGPKGDISA SDIVEDRDEN GSSFKTLCRE MWKHKMFIVY VLVMTYIWIV 300
  301 DTFIYFGLAF YSTNLAGNLY LNFVLMSLVE APAYIFSPIF MNKYGRKVLI SGTHIIAGLS 360
  361 FLGIVLSSEA WHIHFWLLGK FAISCSFMSI YMFASEIFPT DGRNKCIGFC ETLSRFGGML 420
  421 SPYLSHLTAV HALAPAITLS LIAVSGGLLT LILPETLNTK LPSTIAETAS RRQLIDDKSD 480
  481 SSSN