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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cup-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR RHLQFFFMNP  60
   61 MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR HRFLKEWNDD 120
  121 RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIRNDSF ASFSYDVVSH PSGNLGAQIS 180
  181 FESIPPIEVL IDRISNVTVN NNTYNFDIRE VKDTKRLNLT ETEVFQIGQS DDAVRDILAT 240
  241 RGITFLPEDA LKISTVQFKF RLRTIHYSPT AGDQKPECYK ISVSIKFDNS RHTGQVHVTL 300
  301 STVVSYVNVC NGRIIKGQVS GVGWSFDTLL IGGTDIFVLI LCILSLILCC RALIKAHLLQ 360
  361 IKTSDYFENV LKNKITVTDQ LDFLNLWYVM IVVNDALIII GTVAKISIEF QDFDNSLFTL 420
  421 TSIFLGMGAL LVYVGVLRYF GFFSQYNILM LTLKRSAPNI MRFMTCAIVL YAGFLIAGWV 480
  481 IIGPYSMKFR TLAESSEALF SLLNGDDMFA TFYTINDSNT VIKVFGTVYI YLFVSLFIYV 540
  541 VLSLFIAIIM DAYEVVKDRY SDGLRAIEKR GCLRDFVESN PPPSELGSPT TRSAYAPSNL 600
  601 LNLAAGNDSS RALRALHAID NARDWLSSLR DGTRFQSFSN PLNDSNEDVL ADQNANGNDP 660
  661 HNSRPSNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle