YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34337
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHRKLAAFF SCFASRRFSF SLYSLYILFC AGAFPIPRSP SSFFLTISFS SSILPFSSIQ  60
   61 KNYWLVTEKK NQKKKAFGGS EQNEANPPKL LVYMDQDYKA HFKVFCSEVR EWEKIHVVGS 120
  121 LPVLGEWNPR KSFPLTKSTD EENTFHAIVS VPSSIKEFNF RYIRVMYLDP SENNTSEPIM 180
  181 VLSKWETFNN ARTCLIGVES QDGVARKNIT DQFGSYSGKT QITDGWILNE KESVVYFRIH 240
  241 GEALKFFAKS YANKEYRLKV EPFDVRYSEI DGDDVVNLPT PSLPCFSNTD LSVLTREDPI 300
  301 FGDQYFNGSV FRNDQDYLVF RTRTVSLQNL AFRIEFYHGE KRCALSYVLP SSMSGTHGAT 360
  361 VSPVIGLSSA PVGHINVNYM IVKRNKYTDQ NLDIDSMKTT FGRYWRKRNR MLQIGHRGMG 420
  421 SSYTKFVESA GDPFLNLNSE TLAKERTLYF P

Type	Start	End	Confidence
Cytoplasmic	1	17	0.69
Transmembrane Helix	18	36	0.69
Non-Cytoplasmic	37	451	0.91