YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aqp-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFQDKVAS ILRIEDQQFT RELLAECIGT FFLLLIGNAA NIQAAVAVGG NSTSCHIAWG  60
   61 IGFMFAVYLA ASVSGGHLNP AISVAQSILG NLPPWKIIPY AIAQVIGAFL GAAVAYFGHH 120
  121 DDLWKLDGGI RQVTGGQATA GLFTTFPPDH MSVWGSLLDQ VAMTFGANGG FAINPARDFG 180
  181 PRVFCLCAGY GWEVFSAHGY YFWIPIVGAL IGSIIGAWIY KIFVGLHGMN ESLDIQPAKG 240
  241 FNVSVKVDRE YSDSSGSY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.84
Transmembrane Helix	27	47	0.84
Non-Cytoplasmic	48	56	0.73
Transmembrane Helix	57	78	0.90
Cytoplasmic	79	96	0.79
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	199	0.67
Transmembrane Helix	200	222	0.90
Cytoplasmic	223	258	0.80