YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ced-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLKKHKSKL LLVPRDEEQE DAGIVAVLTD RIPSVLLVRW FDLFCFGFAM CSYALDFFSD  60
   61 IGIAIFHFWA GRYLSGSLVL AFALLPSVII NIISMVWMLD DEMHWKRRAH PRRTGTFELN 120
  121 QKRFIPLSKM IVLCICQMGP LFWYYKALYY GWMFRKSSNE NTDGEKRKCF SKMVEAERDA 180
  181 TLLRFFEAFL ESAPQLIIQG SIAASYFQNY YQTGTYPYWL YFQAASLLLS IISISWSVVV 240
  241 QNRSLRMIRD DKVNIWPHEA VLQFCWRFLT ILARIITLVA LVLIFGINVV PLISVHLLVT 300
  301 LVHVIFLQAI HIDACTHIEK LLLLINTFIH IFIPFNMVEG NTRWRYLTAY SVEFIEMMLV 360
  361 CWLLPLSLNT FPYIEKVQVG VPISFIAGIA IMMMYYQFFH PNRRQLIVTQ SQEDLSLNVQ 420
  421 KSVETLTPKL ESSLEISGEQ NTSQDLVSEL LLDVEHEN

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	59	0.87
Non-Cytoplasmic	60	77	0.71
Transmembrane Helix	78	99	0.95
Cytoplasmic	100	124	0.94
Transmembrane Helix	125	144	0.88
Non-Cytoplasmic	145	218	0.93
Transmembrane Helix	219	240	0.94
Cytoplasmic	241	270	0.84
Transmembrane Helix	271	305	0.77
Non-Cytoplasmic	306	315	0.35
Transmembrane Helix	316	338	0.69
Cytoplasmic	339	345	0.46
Transmembrane Helix	346	368	0.81
Non-Cytoplasmic	369	376	0.46
Transmembrane Helix	377	399	0.88
Cytoplasmic	400	458	0.55