YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	kvs-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTERLMYLD LNKGNQIAMV IPSTRKGHAA SRDNFGNSNH HGDEIVHRLN NGRRSEIDEV  60
   61 KPDLVSGAGD TVIKLNVGGT SFRIRISSIF ARSADEKLSA FAQLNHEQRL QACDAFLMPQ 120
  121 EEYYLERSAV LFDSIFKYYI SGQLHRPLDV CPTEFATELA YWKINDGLMS NCCWRGYNMS 180
  181 PSLEELVAPK EKKIELHDRS MRSRIHQFCE GDGSLFSTLF TFGSITFVLI SVIGLVLGSI 240
  241 HEFQVPIYKK GGKSERISNW SIVENENIIW EPHPIFGYVE TVCIIWFTVE FIVRLAVTPN 300
  301 RFQFLVGIMN IVDMIAIIPF YLELGLALFG IDVASLSDIK GALLVVRVLR VLRVVRILKL 360
  361 GRYSSGMRTF ALTLKSSARQ LGMMGMVLST GVVFFSTLLY FVEKDEKDTP FTSIPAAFWW 420
  421 AIVTMTTVGY GDYVPVTVPG KLIASGAIIS GVLVLALPIT IIVDNFMKVS GNVNANIFSS 480
  481 ANQRPIDVAE

Type	Start	End	Confidence
Cytoplasmic	1	213	0.93
Transmembrane Helix	214	237	0.87
Non-Cytoplasmic	238	274	0.88
Transmembrane Helix	275	295	0.86
Cytoplasmic	296	303	0.74
Transmembrane Helix	304	322	0.87
Non-Cytoplasmic	323	379	0.55
Transmembrane Helix	380	402	0.91
Cytoplasmic	403	410	0.51
Transmembrane Helix	411	434	0.81
Non-Cytoplasmic	435	441	0.47
Transmembrane Helix	442	463	0.92
Cytoplasmic	464	490	0.55