YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34235
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNEETEVKP WIVRIILIVG GLFGAHRLYL KQVPEAFVFF STLGVLLIGW LYDSFMFKYE  60
   61 VNEYNQLINQ SENNKEKEKW KNGKMQASQS KFVDFSFTRF LYSVLYGSYI GLATWLACTV 120
  121 TFGWTDINLI PFICVVALGI TAGIYIIGQC GGQSRELSYI WMASFSSMFI MVRLAQTTVF 180
  181 RAIFLTAIVS TVIGNRSARL KKRRHTWKHF LFWSSLFLML VCVILLGCSR KVADKQVTAT 240
  241 RPGTFRETIS VGSLIRDRIF DAKKVHSFFE GNPIIEYHSK SDIKNKNGEK TLKNSSFWYQ 300
  301 VWSGELFDEL TGAAHLTKID WIELTTTFIV DVLRSEARVI DGSSTIEPFK WALWRNYLIH 360
  361 RFSLDPLISD DRLRTECKKW QTEEKSKKGN VDRDYNILAA KQGCSTFLL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	30	0.92
Non-Cytoplasmic	31	35	0.81
Transmembrane Helix	36	56	0.88
Cytoplasmic	57	99	0.85
Transmembrane Helix	100	119	0.91
Non-Cytoplasmic	120	128	0.61
Transmembrane Helix	129	148	0.96
Cytoplasmic	149	156	0.80
Transmembrane Helix	157	175	0.85
Non-Cytoplasmic	176	179	0.66
Transmembrane Helix	180	198	0.86
Cytoplasmic	199	208	0.82
Transmembrane Helix	209	228	0.95
Non-Cytoplasmic	229	409	0.93