YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34162
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	28	0.87
Non-Cytoplasmic	29	83	0.93
Transmembrane Helix	84	106	0.87
Cytoplasmic	107	113	0.89
Transmembrane Helix	114	133	0.94
Non-Cytoplasmic	134	139	0.85
Transmembrane Helix	140	162	0.95
Cytoplasmic	163	174	0.79
Transmembrane Helix	175	193	0.91
Non-Cytoplasmic	194	197	0.80
Transmembrane Helix	198	218	0.90
Cytoplasmic	219	274	0.93
Transmembrane Helix	275	294	0.92
Non-Cytoplasmic	295	302	0.87
Transmembrane Helix	303	324	0.89
Cytoplasmic	325	337	0.85
Transmembrane Helix	338	357	0.92
Non-Cytoplasmic	358	363	0.78
Transmembrane Helix	364	387	0.85
Cytoplasmic	388	395	0.89
Transmembrane Helix	396	418	0.86
Non-Cytoplasmic	419	425	0.77
Transmembrane Helix	426	446	0.93
Cytoplasmic	447	474	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYDVNRFHL CVFVTWQLVN FAVGQYIFNI FSIHVPKWKC GDGPVTKDCK VYQSCPKDNL  60
   61 TFVDPIFTSV AMDFDWVCGS SAHYQSFFSL VQYLGVLVGT VLFGTLSDKY GRKPIGILVI 120
  121 VIAIISLLGT GLSPNRQLLF IARFCSGLSI AGVLVCICAW ILESILSHQR MVIRAFFNWG 180
  181 WTRVFITVVC YLTQEWRLAS YVCAACLVPA LLMLIFLIPE SAIWLHSKGE TAKMIESEKF 240
  241 MAKIAGVSYV PIEHKLIHSK TLLETLNTKG LFKKLFVLWI MWFFVAVCGF ANDLNSNSLA 300
  301 GNLYLNQALF GILLVLSKIV LLFVDTKFEN FKRRTLHQGS QSGMIISFLI LAIFLWIDYH 360
  361 GTGFLIVYLF GTMFIEYTWD AVYLCAIESM ETSSRASAVG SCSLMARIGS LLAPFLTYAN 420
  421 TWWPPAVYFT IIVLGTVNLI ISFMFLQETK NVNLDEVQVN DDEAQEEKIA MLQT