YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lev-8
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIPQRISHI FLLVIFILHI VTINANKHVS QLLENLLTDY NKAVRPVHNA SDALKVKFGA  60
   61 NLCRLIDVDE VNQVLTTSLW LEMQWYDKKL TWNPTDWGGV EYIHIPSDQI WIPDIVLYNN 120
  121 ADGEPHITIT SLAKIDHHGR VVWQPPSIYK SFCPINIKYF PYDWQTCEMK FGGWSNDGET 180
  181 LDLYQIPVDV DDIPQVKRQD DGVEFLYLEK GLGLSFYHES AEWDLLSATS SRYAQIYPGC 240
  241 CGQQYYIDIK YRIIIRRKAI FFTVTLTIPC MLIANVTPFV FLILPNEHKM TYSISVLVAF 300
  301 SVFYLVLIDL IPPTSLSLSL IGIYLLFTLL MVSVSIILSV VTINMYRKQA FSSGMSHWQR 360
  361 WLFVQRLPKL LRLKTLEHTL GPDEGSETTT PRTGSVSVTA SVTQRTLNPN NNSPVFPPQR 420
  421 LRLLSLVQMD EALKQRCAAD NLDLFRKIAG HLKIISAHFH NQQMEGKITE EWQLMSLVID 480
  481 RIFLILFLAV SMAANIMFVY NSPTLFDDRP SLVPSVAHKP LSGGTINVLN T

Type	Start	End	Confidence
Signal Peptide	1	25	0.55
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	258	0.92
Transmembrane Helix	259	283	0.90
Cytoplasmic	284	290	0.80
Transmembrane Helix	291	311	0.90
Non-Cytoplasmic	312	319	0.76
Transmembrane Helix	320	343	0.90
Cytoplasmic	344	481	0.93
Transmembrane Helix	482	500	0.93
Non-Cytoplasmic	501	531	0.92