YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34091
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPMLIWFIV IVLIALLACL AIKFLALRIV LALLLTLPIL LSVAFCVLRR SPVQESNKAV  60
   61 FFNATSIISD RGEAHGSVHK NTIPAFRQAK QNGADTIVMD VRMTKDGMLI VLLPDSVDTD 120
  121 NATYIVDETH WIQMSQLNVY GGNNGTILTF DEAVSWCEAN KMNMIWHIPS FSSDLLTYLR 180
  181 NKIMQDSLYD KVAVTTYNLI AAGRIRCTDR QLLMGMIWKS TEYSIVNGTA VGNMYTSWYY 240
  241 SMMDTFTYWG IRSLLLPSFL GVDFLVTSVD DADRALIVES SASGMRTIIY DMETATERNY 300
  301 FANQMELPMI VNDLVSLLGT GNSSPTTPPS SSTKANKNRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.41
Transmembrane Helix	5	26	0.82
Cytoplasmic	27	28	0.35
Transmembrane Helix	29	48	0.81
Non-Cytoplasmic	49	340	0.55