YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33994
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFVAIILA AVILLVFALG IFLLIPFPIA IFQSIVDSQV YLQQKSDGQL PTGTFYWSKI  60
   61 PAVQIWTFHL FNVTNPDEVL YYGATPNMLE IGPYTYTETE FKDFTQFRDN DNEIFYVNNK 120
  121 TWVYDPTRSC EDCKLSDSVQ FANTAYMSTV FMQIYQPAGP IVGFGLDVLT ILLGEQPLRT 180
  181 VTAGGTLFDG YNDPLITLIN SPLVKVLLSV LGNPVQLPQV PAAGFFPHYS HTCDGNYTIR 240
  241 TGKDNTDYVG QIKTWNGLTH LPWWKTEDTS DLRGTCDGTI QKPGIQKTDT VVQFQSFLCR 300
  301 KYNLHYHESK TVNSIPTYGF KVEDDSYDAI KNPGYRYENF EKVNYFPNWP CGLNHTKQNN 360
  361 GNCALVDCNQ YDNFCNACCD GSHVNGTYVM PPGMVPQRCL PGQMVPTPFG AILSAPHFYG 420
  421 APKVVTESMV GIHPDPELHR PGTFYINPAT GSTIGGEFRM MLSIPVFQSL AWTLMSNAPN 480
  481 AIMPSFTLTI GVVMKDYAVN YIYFNTVTIP NIVLGLGIGF TAVSLIAVLL WGFCYFRSKR 540
  541 NAKPFVLQQH RTEPTWSVAE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	30	0.66
Non-Cytoplasmic	31	448	0.77
Transmembrane Helix	449	463	0.31
Cytoplasmic	464	469	0.42
Transmembrane Helix	470	492	0.56
Non-Cytoplasmic	493	511	0.81
Transmembrane Helix	512	535	0.92
Cytoplasmic	536	560	0.94