YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33977
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARAASPQS PSKQITVVDV YDLAASIGND FEKLIDNYGN ECVRGIMPKV ISALETLEAM  60
   61 AAGNDRENEE IMRLSKAVER LEQEKHQRNQ QHLKFEEELE QVEKTYRKDI DDLQQMVKSL 120
  121 VNENRNLSTT VSSLPNHADS PVSTSMREAD LKMLLELKEM SSQQKDEIKA LQKDVDTYQC 180
  181 QVENLQNSIE KLIRQNEELL RKNASLQKQG RMIVEEKMEV VRRLEKTEES NIELKKLVKE 240
  241 TDRACKDMQL ANQDNNEPRF TLSELREVIK EKNILKGRVM ELEEELDNFK PGAKKEIMRL 300
  301 DDDDDFDRNP LQPDTSSAQS LGVDGDDLPV YGPMPKEPDE KLHPWKYERK DSGVRKFIQF 360
  361 PLLQRLWSDG VPPPRIFCKR VSSTTGSCDP TIPQLMIMAP MLLPVHIFFS AMVFMFQCL

Type	Start	End	Confidence
Non-Cytoplasmic	1	394	0.91
Transmembrane Helix	395	416	0.82
Cytoplasmic	417	419	0.65