YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33976
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	28	0.82
Non-Cytoplasmic	29	49	0.89
Transmembrane Helix	50	72	0.85
Cytoplasmic	73	78	0.80
Transmembrane Helix	79	98	0.89
Non-Cytoplasmic	99	103	0.61
Transmembrane Helix	104	126	0.87
Cytoplasmic	127	138	0.90
Transmembrane Helix	139	160	0.93
Non-Cytoplasmic	161	168	0.88
Transmembrane Helix	169	190	0.95
Cytoplasmic	191	234	0.96
Transmembrane Helix	235	255	0.89
Non-Cytoplasmic	256	281	0.88
Transmembrane Helix	282	304	0.87
Cytoplasmic	305	313	0.84
Transmembrane Helix	314	333	0.96
Non-Cytoplasmic	334	346	0.86
Transmembrane Helix	347	369	0.86
Cytoplasmic	370	388	0.85
Transmembrane Helix	389	409	0.90
Non-Cytoplasmic	410	415	0.69
Transmembrane Helix	416	436	0.88
Cytoplasmic	437	450	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRDLFTVVQ LGASFAFIFS AFNSQGLIEV AVLRKKAETS PDTGITANSG YYSLSIIYFF  60
   61 FTFFNIVIPS IVQKLGAKWS QIIGASGYLF FMLTFLYLNV WLLYFGSAVL GAGAALLWAG 120
  121 NGCYLVEISR RNKMERNSGI MWAMLQSSLI TGGIFLIYVL RSGDLSNSFT FIYMVFSSVI 180
  181 AIGIVVLLFL PNNPAQYGSQ NEDIESSEDP LILPETENDV TLPASSVSEQ LRSTIALLLT 240
  241 PNMLCLAVLF VYSGLEMTFY TGVYTSCLSA TLPLKIFSDL VIPYNALSIG AGQIAGGVVT 300
  301 GPLMKILRMR SQHIIYLAFV GHLTSFILAY LCLPYDSTVH STDASTYLAP TLNLTLIISF 360
  361 LLGVSDAFWQ TQIYVTIGQV FKEDPVNAFA IFKFFQSMAA CVSFFYSSFL FLPSQLLILT 420
  421 IGCVASTFFF LKVRLAIQVP IVELVRDREI