YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33941
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.77
Transmembrane Helix	27	50	0.81
Cytoplasmic	51	59	0.82
Transmembrane Helix	60	80	0.92
Non-Cytoplasmic	81	86	0.68
Transmembrane Helix	87	107	0.95
Cytoplasmic	108	142	0.82
Transmembrane Helix	143	164	0.89
Non-Cytoplasmic	165	173	0.81
Transmembrane Helix	174	193	0.88
Cytoplasmic	194	213	0.79
Transmembrane Helix	214	233	0.94
Non-Cytoplasmic	234	244	0.66
Transmembrane Helix	245	262	0.70
Cytoplasmic	263	267	0.56
Transmembrane Helix	268	285	0.80
Non-Cytoplasmic	286	312	0.68
Transmembrane Helix	313	334	0.78
Cytoplasmic	335	345	0.67
Transmembrane Helix	346	364	0.88
Non-Cytoplasmic	365	379	0.71
Transmembrane Helix	380	403	0.81
Cytoplasmic	404	435	0.71
Transmembrane Helix	436	459	0.72
Non-Cytoplasmic	460	480	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQADVGATT EHSSFVGTLT GCAQRELFLT FLITMLGLFI RNLTLPWIFL GRRYDTGRFT  60
   61 YWLKFVADVI FLCVPSLLAM TVLNEHLILL STIMIIISAV LLIFVLFEAA EQHHNHHQLS 120
  121 VILRQSWSRF VEEQHKPTQF VTYFRSLTMI LVTLAILAVD FPIFPRKYAK TEKFGHSMMD 180
  181 VGVAAFLFQA ALGSRMAKSP SSGRQLSHHS PRPWYLSSTF LLFALGAGRA VLLEVIGYPQ 240
  241 HVTEYGVHWN FFFTMAAIRL SSSILPRCYP LVLSVIFGIC HQTMLKSTGL QAWILDESAN 300
  301 RRENLITANA EGLTSLMGYL TIFYASLAIG EFMAKTSIRI KSWIRRCFQL FALSLILFFI 360
  361 QIAAEKCVDP PCRRVVNATY IFSQLTLMTF ATGVCLSIQM FNTVAWCSSF PQFSNGEDPY 420
  421 SVVSPCLSDS INRHSLLFFL VSNVLTGLVN SRLMLIASLR TLPSPFSWHM SLCAPVSCTF 480
  481