YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sid-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRFVYFCFA LIALLPISWT MDGILITDVE IHVDVCQISC KASNTASLLI NDAPFTPMCN  60
   61 SAGDQIFFTY NGTAAISDLK NVTFILEVTT DTKNCTFTAN YTGYFTPDPK SKPFQLGFAS 120
  121 ATLNRDMGKV TKTIMEDSGE MVEQDFSNSS AVPTPASTTP LPQSTVAHLT IAYVHLQYEE 180
  181 TKTVVNKNGG AVAVAVIEGI ALIAILAFLG YRTMVNHKLQ NSTRTNGLYG YDNNNSSRIT 240
  241 VPDAMRMSDI PPPRDPMYAS PPTPLSQPTP ARNTVMTTQE LVVPTANSSA AQPSTTSNGQ 300
  301 FNDPFATLES W

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	190	0.98
Transmembrane Helix	191	211	0.51
Cytoplasmic	212	311	0.52