YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-37
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTVFIIPII ALIHGHHSQA VIDMKRQRLS SRSTTYNQTL IRYTTKVLDT ILLNQDKNFR  60
   61 PVNPDNSPLQ VEVDISIRSM GPVSEQNMEF SLDCYFRQKW LDRRLAFTPI NPSKPEIPLA 120
  121 SKMLKDIWIP DTYIRNGRKS YLHTLTVPNI LFRVRSDGQV HVSQRLTIRS RCQMFLKKFP 180
  181 MDTQACPIEV GSLGYFSKDV VYKWKDVELD AKMGNTLSQY QVLSLSKSER NVSDFRFSDR 240
  241 NISVLNVYFK LQRQQGYYIL QIYTPCTLVV VMSWVSFWIN KEASPARVSL GIMTVLSMST 300
  301 IGFGLRTDLP KVSHSTALDV YILTCFVFLF AAMVEYAVIN YAQIVYIRKQ IHDLKGLEQN 360
  361 TAMGQMFTAG LMGARRRDTI QVDDLTVEKE EARLKAVPWW KKLCFKDEQG NTSMFYRMAV 420
  421 KAAIAKKTLR NGDPAEVVNK IDNFSKLAFP TLYIIFNVFY WVAYLHLIPD EIDSLPNIAG 480
  481 GLY

Type	Start	End	Confidence
Signal Peptide	1	20	0.75
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	256	0.98
Transmembrane Helix	257	278	0.93
Cytoplasmic	279	287	0.78
Transmembrane Helix	288	307	0.92
Non-Cytoplasmic	308	319	0.80
Transmembrane Helix	320	339	0.95
Cytoplasmic	340	448	0.95
Transmembrane Helix	449	468	0.76
Non-Cytoplasmic	469	483	0.81