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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: npp-8
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFTQISRV WVVIDNNLYM WNYETNDDLA FFDSSDAAIL KVSLVNIKPG VFEPEIQYGL  60
   61 VVGTISDICL YPVFDFVENG ASSISIDSKR CFKIALDGAT VNDISYTSNG RVFYTADDQL 120
  121 FEFVYEKQNG WFGSTNHKCR GVNQTASILG TLISLPFFGS SKEPLDQITI DKSRNIMYLL 180
  181 GRAGTVSVWD LGADGAACAK FLSVPISKIA HEAHILTQFG HDETSFHSIT SIKALEASQS 240
  241 AALNLVATTA KGVRLYFSVS TGPQSTMAMF NNSGTPNERN RPQTSVRPQC LRVAHVRFAP 300
  301 GVTPASIYGD GPNGVSVVYA DESICAMATA NRNTIFAFSN FFYPSSQFFV ESTTECDISG 360
  361 HVWEIETVSR CKVKSRPPPR HLVDRVHPHS YFRSQLESGN QKLLVCSNEG VFEFTHVNAV 420
  421 DALREALFDG GVEGNATLQL WQKLGSTEML CLAFRILTSD APIDERIRGK AEQILYSLKE 480
  481 APEIVENEQQ RMLDQSTTTS WSPNDSSMAE WRHRMKTPLL SSTPRTDGRN GNAGGAPPQA 540
  541 HFSSPFSPML DMSMASGHHN GNMRMSPSRR HDALFYYFSR LVAPVWNDTI CEVLNGKQLT 600
  601 ITFEPESIQS LKEEIQKLAR LMDDYRLVPM MEFNGYSSNM TDRLNHEATS LERHSLIGLR 660
  661 KLIDATLETL SLWLLAYEYN LTAISSGMNP QLLPNFSSRK LAHLVSDGSN LNAELIRAMI 720
  721 KYFLGDEAGT KILSESLRQL CPNLYSEDDA CVTFAMEQLE AARKQGPGAA RRRLVQSAVE 780
  781 MFKQSIGKVV LASTCQQLAE SVEDYEPIVE LCLLRAAKDD PKQLALLAYK HGRSGSDAEM 840
  841 LGAEKKREDC YSWKMGLTQR CAYLSHAILC AQSCKDSTVT TNIDELRDRL DVANVQMRIK 900
  901 DALGCSASAS ARNQEFVRKL DGPILSLQEL LLQYVVPFKL HKIKLSLLHC AGMYVEKHIF 960
  961 ETWEDIIQDA IASSYAQRRT SFEPVVMPGG LIILGDRNIS RKLCSKWREL SSESSKICLR1020
 1021 LIAEDQPLVT VSHTFYHSSV DRVTSRLLFH FKTLAPSSQL FRIGSPSFPT NAHVVFFFFC1080
 1081 HLYYHYFFLF 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle