YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGVLLPYVR KFQRSAESND IADRFSYQYT STLLGFSAIM MAASQYVGRP IQCWVPAQFT  60
   61 RTWEKYAETY CFIKGTYFLP GAFASEGEMS VTSPDDAVTA TPQVGYYQWI PIVLVLQAFL 120
  121 FYLPSIIWRT FNESCELKIK ELAAVSEASR KIKSNMSDDQ VKATKFGRYF FKKLNFRNES 180
  181 PVFKETGSVV ASGKFLPALY LLVKILYLAN IVLQFWILTY FLETKSWMWG WQTFQDLMAG 240
  241 REWETTGIFP RVTMCDFSIM DLTSVHDHSI QCVIVINMLA EKVYVFFWFW LLFVGLLTVC 300
  301 SLAYWAVIYM LQSVGRNFIY SYLQQTPEFQ TEQERGSFVP ANFVDKCLTP DGVFISRLVQ 360
  361 QNSGDLFTSI MLGEMFSLYR AREAEKAHKK DDDSALPASA PVDLQEDDDD DTPFPPPTKA 420
  421 VAETLTSDDE EEETDVDSPD TTATLPR

Type	Start	End	Confidence
Cytoplasmic	1	24	0.84
Transmembrane Helix	25	47	0.73
Non-Cytoplasmic	48	106	0.82
Transmembrane Helix	107	128	0.85
Cytoplasmic	129	199	0.95
Transmembrane Helix	200	222	0.86
Non-Cytoplasmic	223	285	0.89
Transmembrane Helix	286	308	0.94
Cytoplasmic	309	447	0.87