YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srw-14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSTTTTTA IPDDNYLAYD YDTDYDIYKT IYNISTKTNL YLEIATIIVN FFHLIVLLQK  60
   61 EMRLCAVYIF MIGLCISDII LTSINFYNQA GELGWLPILF AGSDGISCLR EDYIEINIGM 120
  121 LSMSTTSQIT CRLSLWLAIL MAVIRLLSVT FPMSQRVKNF TAAKGSVIIL IICLMFWILY 180
  181 STWQFALFRV LWLPDNASEL CQVMFESSIK PRYVLATPAN LPQMLSNWGF IEFIVNFSSA 240
  241 IIYPLLTISL LIALLKIKQR RQNLQRKDTE PADNTTKLIL FMTITFVLSE GLSGFNALLM 300
  301 YNIEKIEENC PDFVSAIYTA ESLIAVLKTF NAFSHFFVCF FLSSQYRNVA KSLIIPKKQN 360
  361 KPVELTRSTS TITVRSKTKP M

Type	Start	End	Confidence
Cytoplasmic	1	63	0.57
Transmembrane Helix	64	87	0.89
Non-Cytoplasmic	88	128	0.94
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	159	0.88
Transmembrane Helix	160	183	0.84
Non-Cytoplasmic	184	232	0.95
Transmembrane Helix	233	255	0.93
Cytoplasmic	256	275	0.92
Transmembrane Helix	276	298	0.79
Non-Cytoplasmic	299	323	0.83
Transmembrane Helix	324	344	0.70
Cytoplasmic	345	381	0.85