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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gtl-1
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKRGSIVP AIHKAVAESL RANSVTVEEN ESERETETQT KRRRKKQRST SSDKAPLNSA  60
   61 PRHVQKFDWK DMLHLADISG RKRGNSTTSH SGHATRAGSL KGKNWIECRL KMRQCSYFVP 120
  121 SQRFSERCGC GKERSKHTEE VLERSQNKNH PLNHLTLPGI HEVDTTDADA DDNEVNLTPG 180
  181 RWSIQSHTEI VPTDAYGNIV FEGTAHHAQY ARISFDSDPR DIVHLMMKVW KLKPPKLIIT 240
  241 INGGLTKFDL QPKLARTFRK GIMKIAKSTD AWIITSGLDE GVVKHLDSAL HDHGNHTSKN 300
  301 HVVAIGIASW GMLKQRSRFV GKDSTVTYAT NVFNNTRLKE LNDNHSYFLF SDNGTVNRYG 360
  361 AEIIMRKRLE AYLAQGDKKR SAIPLVCVVL EGGAFTIKMV HDYVTTIPRI PVIVCDGSGR 420
  421 AADILAFAHQ AVSQNGFLSD NIRNQLVNIV RRIFGYDPKT AQKLIKQIVE CSTNKSLMTI 480
  481 FRLGESSRED LDHVIMSCLL KGQNLSPPEQ LQLALAWNRA DIARTEIFAN GTEWTTQDLH 540
  541 NAMIEALSND RIDFVHLLLE NGVSMQKFLT YGRLEHLYNT DKGPQNTLRT NLLVDSKHHI 600
  601 KLVEVGRLVE NLMGNLYKSN YTKEEFKNQY FLFNNRKQFG KRVHSNSNGG RNDVIGPSGD 660
  661 AGRERMSSMQ ISLINNARNS IISLFNGGGR KRESDDEDDF SNLEEEANMD FTFRYPYSDL 720
  721 MIWAVLTKRQ KMAKLMWTHG EEGMAKALVA SRLYVSLAKT ASLATGEIGM SQDFTEFSDE 780
  781 FSELAVEVLE YCTKHGRDQT LRLLTCELAN WGDETCLSLA ANNGHRKFLA HPCCQMLLSD 840
  841 LWQGGLLMKN NQNSKVLTCL AAPPLIFLLG FKTKEQLMLQ PKTAAEHDEE MSDSEMNSAE 900
  901 DTDTSSDSSS DSDDSDEEDA KLRAQSLSAD QPLSIHRLVR DKLNFSEKKK PDMGISRIVV 960
  961 APPIVTGRNR ARTMSIKKSK KNVIKPPACL KIETSDDDEQ EQKKATEMYI NRTGKRGSVA1020
 1021 VAMNHDDMYI DPSEELDTQT RQKSSREFSS SRNVTVQVYT QRPLSWKKKI MEFYKAPITT1080
 1081 YWLWFFAFIW FLILLTYNLL VKTQRIASWS EWYVFAYIFV WTLEIGRKVV STIMMDTSKP1140
 1141 VLKQLRVFFF QYRNGLLAFG LLTYLIAYFI RLSPTTKTLG RILIICNSVI WSLKLVDYLS1200
 1201 VQQGLGPYIN IVAEMIPTMI PLCVLVFITL YAFGLLRQSI TYPYEDWHWI LVRNIFLQPY1260
 1261 FMLYGEVYAA EIDTCGDEIW QTHEDENIPI SMLNVTHETC VPGYWIAPVG LTVFMLATNV1320
 1321 LLMNVMVAGC TYIFEKHIQS TREIFLFERY GQVMEYESTP WLPPPFTIIY HVIWLFKLIK1380
 1381 SSSRMFERKN LFDQSLKLFL SPDEMEKVHT FEEESVEDMK RETEKKNLSS NDERIHRTAE1440
 1441 RTDAILNRVS HLTQLEFTLK EEIRELEHKM KNMDSRHKEQ MNLMLDMNKK LGKFISGKYK1500
 1501 RGSFGGSGSD GGGGSSDNSK LEPNNSVPMI TVDGPSPIGS RRTSGQYLKR DSLQAKKKIT1560
 1561 ENRRSSLEQP KIPSIQFNLM EDQDESAAES ATEEVSISIP VPQMRVRQVT ESDKSDLSED1620
 1621 DLITREDAPP TSINLPRGPR RHALYSTIAD AIETEDDFYA DSPVPMPMTP VQPADGSFFG1680
 1681 ENDSRYQRDD SDYE

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