YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33737
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.62
Transmembrane Helix	13	35	0.52
Non-Cytoplasmic	36	55	0.85
Transmembrane Helix	56	76	0.93
Cytoplasmic	77	103	0.88
Transmembrane Helix	104	125	0.83
Non-Cytoplasmic	126	128	0.48
Transmembrane Helix	129	147	0.87
Cytoplasmic	148	156	0.70
Transmembrane Helix	157	177	0.94
Non-Cytoplasmic	178	196	0.88
Transmembrane Helix	197	217	0.95
Cytoplasmic	218	224	0.82
Transmembrane Helix	225	246	0.93
Non-Cytoplasmic	247	254	0.79
Transmembrane Helix	255	274	0.96
Cytoplasmic	275	285	0.75
Transmembrane Helix	286	306	0.91
Non-Cytoplasmic	307	316	0.64
Transmembrane Helix	317	337	0.86
Cytoplasmic	338	388	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQPHVAVE SYLVGNDSIM ASVASSSQVI LPVAADSSSI GSVNTMDEVH YASTDFYIGL  60
   61 GLAVSSSLFI GSSFIIKKKA LLKLASGDTS QRASEGGYGY LREWMWWMGV ITMGIGEACN 120
  121 FAAYAFAPAS LVTPLGALSV IVTAILSSRM LNERLNLLGS IGCALCLLGS TVIVIHSPKE 180
  181 EEVGSMADLA LKMKDAGFLI YVILIILATG FIVVYVAPRY GHSNILVYIS VCSLIGSLSV 240
  241 LSETLAGNQQ FTNWLTYFWL ASVAMCVSVQ LIYLNKALDI FNTSMVTPIY YVFFTTFVIL 300
  301 ASSILYKEWS CLGASDVIGN FVGFLTTIIG IFQMQLFRDV NISLYQVQRL VSRPSATLAN 360
  361 ADFSSSSTNL VDDYCMRQSN SNRRMVYT