YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dpy-10
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNAKEDYR TFSLTTNYSR QMIYRCVTGL QIGFSLFSFI IVCVALPIMY NHVQNTITYV  60
   61 DREMAYCEVR FLYFYCIKFF STLQRSNDEA ALELQYGKMR MTGNRTARGA YGSGASHGFR 120
  121 PTAYGDEITG APLETECPGC CIPGPPGPRG SSGTPGKPGL PGNAGKPGMP GTTPNQTCPL 180
  181 NQVREPPPCR PCPKGPPGIK GWPGFPGDVG PPGPPGLKGI DGEDGAPGET GPTGPPGYRG 240
  241 GPGAPGDKGP TPEGDLKEGP PGDEGPPGPI GAPGMPGLPG RNGLTGGQGE RGWPGVSGES 300
  301 GEPGYPGPEG PMGGQGPPGE PGVCVCQNVD SILLINPGPQ PRIRADDYNS DDGYGGSRGG 360
  361 GDRAGYQGYG RK

Type	Start	End	Confidence
Cytoplasmic	1	26	0.91
Transmembrane Helix	27	50	0.87
Non-Cytoplasmic	51	372	0.98