YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dop-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSRHYSRR STTTTTTATP RRGDKKTSSQ NKVESIRTSI FSKLNFLCPT RFKNQRSPQD  60
   61 PHTPAAHNRS NISDQKARLT LGVIMGTFLV CWLPFFTVNI LRAWLPEIFS SKTIMAVTWL 120
  121 GYANSSANPL IYSIFNRDFR RAFKKIIVRV FGCCWEEPDL NKSISSRYAA PDNIERRRSC 180
  181 TRSSESAHDN NNDANATRLN LLSNNNEETI PE

Type	Start	End	Confidence
Cytoplasmic	1	78	0.98
Transmembrane Helix	79	98	0.93
Non-Cytoplasmic	99	114	0.78
Transmembrane Helix	115	135	0.85
Cytoplasmic	136	212	0.91