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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-28
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.16
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWLTLLSC ILLTALHGNI VEDVGAAQQA SYPPPPPPFP FNVIVILPKR ESTYDNFGMT  60
   61 LQKAMPVIDI AVQEVIKAKK LPPGWINLTY WDSRLYEDIL LAERHATVGV IQAYCEHRLD 120
  121 AILGFADNYG LATVTKVTAG LNGGIPILTT SGMPSLLNSK KEYPFLTRMQ GSYRLLADSM 180
  181 YQLIAYHDED SVSKSNSSLN YLNLIFFYHD KRRAVNRVIA QDESQETGAT SSHCYFSLYA 240
  241 IKRYFTEKSK TFKREWALNT PQFPFDEDLV IERETFKQWL REISLQSNVI ILCASPDTVR 300
  301 EIMLAAHDLG MATSGEYVFI NIDVSTGSHA EQPWIRANDT NNEENEKAKE AYRALKTISL 360
  361 RRSDLDEYKN FELRVKERAD QKYNYTNITG KDYEMNNFIS AFYDAVLLYA IALNETIQSG 420
  421 LDPRNGHNIT SRMWGRTFVG ITGNVSIDHN GDRYSDYSLL DLDPVQNRFV EVAYYSGASN 480
  481 QLKTVGQLHW VGGKPPTDLP ICGYDKSKCP GYPLHVYLLM GSFLLILVLV GLFIFFWRRY 540
  541 KLEQELAAMS WKIRWEELDG EESQKKNEKK KAKKRKNHND YLPESDPLLR STSRSSVNSD 600
  601 KFDEDSLIPI RFRLRSSSSG TTRKISAMID RKLSIFTRKK STPPSESQKN GGLTPNSLQK 660
  661 AENGDCSPIN EVQFRLPLND RRVSSPSSEA TRKKNSNEED PENGAKKSLS LKNRKLSFGM 720
  721 VSFKSGSGGS VETIAQNNTQ IYTKTAIFKG VVVAIKKLNI DPKKYPRLDL SRAQLMELKK 780
  781 MKDLQHDHIT RFTGACIDFP HYCVVTEYCP KGSLEDILEN EKIELDKLMK YSLLHDLVKG 840
  841 LFFLHNSEIR SHGRLKSSNC VVDSRFVLKV TDFGLHRLHC LEEINLEEIG EHAYYKKMLW 900
  901 TAPELLRDSN APPMGTQKGD IYSFAIILHE MMFRKGVFAL ENEDLSPNEI VQRVRKPVSE 960
  961 DQEPLRPWVS ETGEGEGDDA LNDTLLSLMV ACWSEDPHER PEVSSVRKAV RSLNRDNETS1020
 1021 NLVDNLLKRM EQYANNLEGL VEERTQEYLA EKKKVEELLH QLLPPAIADT LIAGRAVQAE1080
 1081 SYDCVTIYFS DIVGFTSLSS QSTPMQVVTL LNDLYLAFDG VVDNFKVYKV ETIGDAYMVV1140
 1141 SGLPERRDDH ANQIAQMSLS LLHKVKNFVI RHRPHEQLKL RIGMHSGSVV AGVVGSKMPR1200
 1201 YCLFGDTVNT SSRMESNGLP LKIHVSQQTY DILMQEAGFK LELRGSVEMK GKGMQTTYWL1260
 1261 RGYKDVEIPD FGEEFA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle