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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-28
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSDVLLLS LVISSSSSSS HQHSLLPIDI VVGLPIEEGD RGKNPFLLTL AKSKPVFDVA  60
   61 LQDVYHLRIL PYGSLKVTFE NSALSDAVGP QKMIEHYCNK TVDAIMGLPY VYALAPVARI 120
  121 SKFWGQGVPV FTTTALVDEL GDRNEFPLLT RMMGSYKSLG KLVTRIAERF EWQHYFFMFN 180
  181 DEVARGPRNK GRSECYFSLS AIKNLIMNNK TSTWNVKMFS EFEADRLQYR ALLSEASVMS 240
  241 NLIILCASPD TVREIMLAAH DLGMATSGEY VFINIDVSTG SHAEQPWIRA NDTNNEENEK 300
  301 AKEAYRALKT ISLRRSDLDE YKNFELRVKE RADQKYNYTN ITGKDYEMNN FISAFYDAVL 360
  361 LYAIALNETI QSGLDPRNGH NITSRMWGRT FVGITGNVSI DHNGDRYSDY SLLDLDPVQN 420
  421 RFVEVAYYSG ASNQLKTVGQ LHWVGGKPPT DLPICGYDKS KCPQGYPLHV YLLMGSFLLI 480
  481 LVLVGLFIFF WRRYKLEQEL AAMSWKIRWE ELDGEESQKK NEKKKAKKRK NHNDYLPESD 540
  541 PLLRSTSRSS VNSDKRSSSS GTTRKISAMI DRKLSIFTRK KSTPPSESQK NGGLTPNSLQ 600
  601 KAENGDCSPI NEVQFRLPLN DRRVSSPSSE ATRKKNSNEE DPENGAKKSL SLKNRKLSFG 660
  661 MVSFKSGSGG SVETIAQNNT QIYTKTAIFK GVVVAIKKLN IDPKKYPRLD LSRAQLMELK 720
  721 KMKDLQHDHI TRFTGACIDF PHYCVVTEYC PKGSLEDILE NEKIELDKLM KYSLLHDLVK 780
  781 GLFFLHNSEI RSHGRLKSSN CVVDSRFVLK VTDFGLHRLH CLEEINLEEI GEHAYYKKML 840
  841 WTAPELLRDS NAPPMGTQKG DIYSFAIILH EMMFRKGVFA LENEDLSPNE IVQRVRKPVS 900
  901 EDQEPLRPWV SETGEGEGDD ALNDTLLSLM VACWSEDPHE RPEVSSVRKA VRSLNRDNET 960
  961 SNLVDNLLKR MEQYANNLEG LVEERTQEYL AEKKKVEELL HQLLPPAIAD TLIAGRAVQA1020
 1021 ESYDCVTIYF SDIVGFTSLS SQSTPMQVVT LLNDLYLAFD GVVDNFKVYK VETIGDAYMV1080
 1081 VSGLPERRDD HANQIAQMSL SLLHKVKNFV IRHRPHEQLK LRIGMHSGSV VAGVVGSKMP1140
 1141 RYCLFGDTVN TSSRMESNGL PLKIHVSQQT YDILMQEAGF KLELRGSVEM KGKGMQTTYW1200
 1201 LRGYKDVEIP DFGEEFA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle