YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nac-3
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	28	0.79
Non-Cytoplasmic	29	73	0.56
Transmembrane Helix	74	96	0.73
Cytoplasmic	97	131	0.76
Transmembrane Helix	132	153	0.88
Non-Cytoplasmic	154	180	0.89
Transmembrane Helix	181	200	0.94
Cytoplasmic	201	228	0.91
Transmembrane Helix	229	248	0.88
Non-Cytoplasmic	249	264	0.80
Transmembrane Helix	265	284	0.87
Cytoplasmic	285	312	0.90
Transmembrane Helix	313	332	0.92
Non-Cytoplasmic	333	352	0.85
Transmembrane Helix	353	384	0.76
Cytoplasmic	385	395	0.71
Transmembrane Helix	396	416	0.88
Non-Cytoplasmic	417	432	0.74
Transmembrane Helix	433	460	0.75
Cytoplasmic	461	478	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVMPLAVT AMLPVVLFPL VGVLDANTTA KEYMNDTNFL FIGGLIMAAA VEKCDLHERV  60
   61 ALSVLRCVGS EPKWIMLGFM TVTALLSSFI SNTATTAMMV PIGQSVVQQL ISSFQHHPTN 120
  121 GERGRLGCKK MATGLVLSIC FAANIGGTGT ATGTPSNLVM LGQLSALFPK VDGSLNYVTW 180
  181 IFFAYPLMLL CLFVAWMTLV SFFLRDAPEK DEAVTEMLKT RYNELPRMTY AEKSVFVCFC 240
  241 ILLSLWVFRN PGVVPGFGVF FKKGAYTDAT SAMIVAFLLF VLPSERPDLA TYIKKEDLKK 300
  301 RGCLMDWKTM QETFPWSVVL LLGGGFALAA GVKESGLSLL IGNSLSSIEH LPLWILQLLT 360
  361 MLIAMVITNI CSNTVTASIF VPIVATLAQR AGHHPFTLML PTTLASSFAF IFPVGTPPNA 420
  421 IVFGSGMVKV SDMAFVGGII SLELLVLTVL YMNSIAYLTL PLLEFPTWAI IANSTMQQ